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rs212880702 SNP Detail
Summary
  • ID
    rs212880702
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr3:125218756 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCAAATCAC ATACAAGGAT
    GCTGCAGATG AAGAGATGTT TCCAGAGTCT TGGGTAATCA ATAAATCAAA ATGGAAGCAC
    ATCTTGTTTC AACTCTAAAA TCTACTCAGA GAAGAAAAAT TTAGGATCCC GAAAGCCTGT
    TTACTAATAA ATGATAATAC CAGCCTGAAT ATAAATTTAG CCACAATTTC CCATTTCTTC
    W
    AATATAATCC TTGCCTGATA TCTGAGAAAT GAATTGTATC ATAACCCACA TCATAGCATA
    GACATTTTTT TGTGTGTATT CATTTCATGC TGGCTTTATC CTAATTACAT AACTTTAAGA
    TTTCATACAG TGTTTAAAAA CATTAAAAGT GAAAGCCAGC TAGAAGAAAC AGTGTGTAAA
    GGCATCTACC TCCAATCCTG                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BTBR T<+> Itpr3/J
BUB/BnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss359583365 MGP_WTSI_3_125128025 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BTBR T<+> Itpr3/J
BUB/BnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212880702 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359583365 MGP_WTSI_3_125128025 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:125218756 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ndst4 N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4 Intron
Rr584610 regulatory region 584610 1070 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory