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rs212881502 SNP Detail
Summary
  • ID
    rs212881502
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr10:121423718 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTAAAAAAGT CAAGCCACTT
    GTGAAACTAT TAGCAAGCAC AGAGACGGAA ACTCCACTGG TTAGGCACAG GACTAACTCA
    GGCACCATAA AACCCTCTGT CTTCTCACCT GTAACAAATG AGATTCCCTA GAGAGAATTA
    TTTGGGTGCT TGCTTTTAAA AATCAGGTAC TCAATGACGG AAAGGCTTCT TGGTCATGAC
    R
    GTACTTGGGT AATCTCAAGG AATGAAGATG AGGATCATTA GACATGATTA CATTAAAATT
    AAGTTCCTTA TGTATATGCT CTGATTTCCA TGTCCTGATT TCTCAGGTCT AAACACATGA
    ACCCTCTGTA GGGCTTTAGA GAGCCGTGTA TGGACTCGAT AGTACAGTAA TACAAGCTAA
    TACTGAGACC TGTGTTTTAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss382025260 MGP_WTSI_10_121024869 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs212881502 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss382025260 MGP_WTSI_10_121024869 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:121423718 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2289 CpG island 2289 493 bp distal
Rr402304 regulatory region 402304 1640 bp downstream
Rr402305 regulatory region 402305 787 bp downstream
Rr440247 regulatory region 440247 1037 bp distal
Rr440248 regulatory region 440248 536 bp distal
Tbk1 TANK-binding kinase 1 1026 bp upstream
Tssr96043 transcription start site region 96043 1571 bp downstream
Tssr96044 transcription start site region 96044 1550 bp downstream
Tssr99623 transcription start site region 99623 1930 bp upstream
Tssr99624 transcription start site region 99624 1903 bp upstream
Tssr99625 transcription start site region 99625 1843 bp upstream
Tssr99626 transcription start site region 99626 1092 bp upstream
Tssr99627 transcription start site region 99627 1010 bp upstream
Tssr99628 transcription start site region 99628 989 bp upstream
Tssr99629 transcription start site region 99629 961 bp upstream
Tssr99630 transcription start site region 99630 933 bp upstream
Xpot exportin, tRNA (nuclear export receptor for tRNAs) within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory