rs212887509 SNP Detail

Summary

• ID
  rs212887509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43087818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGAGATCTT ATTGTTCCAA GATCAGTTTA
  GCCAAGACAT AAACCGAGCc aggcttctca tcccagttac tcaggtggct ggagcaagga
  gcatcacaac ttcaaagtct gcctgggcaa catagagagt tcaaggccag ctaaggcaac
  R
  tagtgagacc ctacctcaaG GTACAAAGCT AAACAAGAgg gctgggatga tggctcagtt
  atagagactt gctgagcatg aatgaggtcc aagttgcatc cccagcacct aagtcatgca
  tatataagcc tatggtgggt ggcacaGGAT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322196976	CHEV_7_50693764	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212887509					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43087818 () rs orientation: forward

Symbol	Name	Function Class
Nkg7	natural killer cell group 7 sequence	148 bp downstream
Rr645958	regulatory region 645958	1969 bp distal
Rr645959	regulatory region 645959	1922 bp distal
Rr645960	regulatory region 645960	1254 bp distal
Tssr2210	transcription start site region 2210	1375 bp downstream
Tssr65999	transcription start site region 65999	1413 bp downstream
Tssr66000	transcription start site region 66000	1220 bp downstream
Tssr66001	transcription start site region 66001	798 bp downstream
Tssr66002	transcription start site region 66002	770 bp downstream