rs212895804 SNP Detail

Summary

• ID
  rs212895804
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144367992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGACAAAC AGATGAATTC GCTAGGAGGC
  TGGAGCTGCT TTAAAAGGGC AGGTCCACGG ATGAGGCAGA GCAGAATCCA CCTCTAACGC
  TCTGAGCTCA GTTCCCTCGA GATCATTCAC TCTTCACTGC CTTCAGCCAG TGCGCGCGCA
  S
  ATGCACACAC ACACACACAC TCACTCTCCT GACTTCAAGG CAACTCATTA CATAAGGGGA
  GCAGGTAACT CTGCACGTAG CATGAATTAC TTAGAGCCAA ATCTTAAAAG AGGTTCTAAC
  CCCCCACAGT CTCACCTTTG CAAACCACTG                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320536499	CHEV_2_144351808	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212895804					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144367992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	1030 bp proximal
Dzank1	double zinc ribbon and ankyrin repeat domains 1	within coordinates
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	1673 bp upstream
Rr566471	regulatory region 566471	within coordinates
Rr566472	regulatory region 566472	787 bp proximal
Rr566473	regulatory region 566473	1316 bp proximal
Rr566474	regulatory region 566474	1687 bp proximal
Tssr20540	transcription start site region 20540	1443 bp upstream
Tssr20541	transcription start site region 20541	1666 bp upstream
Tssr20542	transcription start site region 20542	1719 bp upstream
Tssr26607	transcription start site region 26607	1269 bp downstream
Tssr26608	transcription start site region 26608	1353 bp downstream
Tssr26609	transcription start site region 26609	1367 bp downstream
Tssr26610	transcription start site region 26610	1429 bp downstream
Tssr26611	transcription start site region 26611	1454 bp downstream