rs212915102 SNP Detail

Summary

• ID
  rs212915102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34550450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTC CAACCCGGAA CTTGGGATCG
  Y
  GCGCCTTGGA TGACGGGAGT CGTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321074929	CHEV_4_34497699	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212915102					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34550450 () rs orientation: forward

Symbol	Name	Function Class
Akirin2	akirin 2	487 bp upstream
Cpgi14119	CpG island 14119	within coordinates
Gm68522	predicted gene, 68522	176 bp upstream
Gm70378	predicted gene, 70378	within coordinates
Rr100806	regulatory region 100806	within coordinates
Rr367598	regulatory region 367598	within coordinates
Tssr36766	transcription start site region 36766	137 bp upstream
Tssr36767	transcription start site region 36767	227 bp upstream
Tssr36768	transcription start site region 36768	450 bp upstream
Tssr36769	transcription start site region 36769	468 bp upstream
Tssr36770	transcription start site region 36770	481 bp upstream
Tssr41190	transcription start site region 41190	987 bp downstream