rs212918888 SNP Detail

Summary

• ID
  rs212918888
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:60437318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGGGGA CTTGCTCACG
  ACCAGACACG GAATGTAAAT TTGCACATCC TTCGAAAAGC TGCCAAGTTG AAAATGGACG
  AGTAATCGCC TGCTTTGATT CACTGAAAGT GAGTAAATGT TACCTCCTTT TAAGGATATG
  CAATGATTGA TTAAGGGGTA TGGGTACATG GTACTCTAAA TTTGGAATTA TGGGTTGTTT
  K
  GTTAACACTT TAGTTACTCA GAATGTTCTG GCTCCTGAGG CTGGCCTGGG GCTCTCAACT
  AGATCTCATA GAATCAAACA GAGCCAAACT TTGTTATAAA TAACTTTGTC AGGCCTTTAA
  CTCCGAACTC CATGCCTCCC CTCCCCTCCC TTTCTTTTCT TTTCTTTTTT TTTTTTTTTT
  CCTAAAGCAG AATTGTTACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358137918	MGP_WTSI_3_60333819	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212918888					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358137918	MGP_WTSI_3_60333819	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:60437318 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbnl1	muscleblind like splicing regulator 1			Intron
				Noncoding-Transcript-Variant
Rr577418	regulatory region 577418			738 bp distal
Rr577419	regulatory region 577419			1987 bp proximal
Tssr29294	transcription start site region 29294			1763 bp downstream
Tssr29295	transcription start site region 29295			1641 bp downstream
Tssr29296	transcription start site region 29296			1581 bp downstream
Tssr29297	transcription start site region 29297			1402 bp downstream
Tssr29298	transcription start site region 29298			1376 bp downstream
Tssr29299	transcription start site region 29299			1118 bp downstream
Tssr29300	transcription start site region 29300			640 bp downstream
Tssr29301	transcription start site region 29301			444 bp downstream
Tssr29302	transcription start site region 29302			316 bp downstream
Tssr29303	transcription start site region 29303			158 bp downstream
Tssr29304	transcription start site region 29304			179 bp upstream
Tssr29305	transcription start site region 29305			422 bp upstream
Tssr29306	transcription start site region 29306			1337 bp upstream