rs212922970 SNP Detail

Summary

• ID
  rs212922970
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44397498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATCAGATG AGTGGCTCAA
  AGGTAAAGGC AGGCCTGGCA TGGTGGCGCA TGCCTTTAAT CCCAGCACTC AGGAGGCAGA
  GGCAGGCGGA TTTCTGAGTT CAAGGCCAGC CTGGTCTACA AGGTGAGTTC CAGGACAGCC
  AGGGCTACAC AAAGAAACTC TGTCTCAAAA AGCCAAATGC AGCCTGGTCT ACATAGTGAG
  K
  TCTTTTCTTT TTTTCCTCTT CTCGCTTTTC TTCTGCCTGC CTGCCTGCCT GCCTGTCTGT
  CTGTCTGTCT GATATCAATG GCTTTGCAGC CTACTCTACA TAGTTCCTTT CTTTCTTCTG
  AAAAAAAAAT TTAAGATACG GTTTCTCTAT GTAGCTCTCA CTATGTTGGA ATTTGCTTTG
  TAGTCCAGGC TGGGCTTCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402552386	MGP_WTSI_19_44483549	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212922970					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402552386	MGP_WTSI_19_44483549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44397498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10894	CpG island 10894	1408 bp distal
D19Mit1000	DNA segment, Chr 19, Massachusetts Institute of Technology 1000	1230 bp distal
Gm59215	predicted gene, 59215	1910 bp downstream
Rr363360	regulatory region 363360	97 bp distal
Scd1	stearoyl-Coenzyme A desaturase 1	1350 bp upstream
Tssr5525	transcription start site region 5525	1584 bp upstream
Tssr5526	transcription start site region 5526	1551 bp upstream
Tssr5527	transcription start site region 5527	1541 bp upstream
Tssr5528	transcription start site region 5528	1511 bp upstream
Tssr5529	transcription start site region 5529	1460 bp upstream
Tssr156614	transcription start site region 156614	1021 bp downstream
Tssr159517	transcription start site region 159517	1561 bp upstream
Tssr159518	transcription start site region 159518	1490 bp upstream
Tssr159519	transcription start site region 159519	1436 bp upstream
Tssr159520	transcription start site region 159520	1391 bp upstream
Tssr159521	transcription start site region 159521	1347 bp upstream
Tssr159522	transcription start site region 159522	1237 bp upstream
Tssr159523	transcription start site region 159523	1182 bp upstream
Tssr159524	transcription start site region 159524	1158 bp upstream
Tssr159525	transcription start site region 159525	302 bp upstream
Tssr159526	transcription start site region 159526	283 bp upstream
Tssr159527	transcription start site region 159527	1398 bp downstream
Tssr159528	transcription start site region 159528	1416 bp downstream