rs212924257 SNP Detail

Summary

• ID
  rs212924257
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:109722441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCCGCTC GCTGTCCTGC
  GCCGCCACTC AAAAAAAAAA AAAAAGTTGG CAGCCCCCCT TTTTGGCTCT GCCTAGAAGT
  TGTCGGTTAA GATTATGTAA CTGAACAATG GGCCTGGTCT GTAACTACTC CACTTTACAA
  AGGGCCTGGT CCCCGCTGTC CAGGTGGTTG AGTATTGGGT CTCGGTGGTC CGGTGTGCCA
  K
  GGTGCCGGAT TGCTGCTGGC CACCTGACAC TCCGAGCCAT ATGGTGCCTG TTAAATCCGG
  TGTCCGGGCC TGTAATTTGG GGGGCACGGA TGGAAGGAGT TAGGTTTATT AAAGGGTTTG
  TTCCAACCCC CTGGACTTGT GGTTCCATGT GATATGGCAT TAGAGATTCT GCGCGTCCTT
  TTGAGTCTCT GTGTTTACCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394508	CHEV_7_117266748	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212924257					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109722441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19571	CpG island 19571	within coordinates
Gm45819	predicted gene 45819	1494 bp downstream
Rr400541	regulatory region 400541	1161 bp downstream
Rr400542	regulatory region 400542	646 bp upstream
Rr653190	regulatory region 653190	1178 bp distal
Tssr68487	transcription start site region 68487	1099 bp downstream
Tssr68488	transcription start site region 68488	939 bp downstream
Tssr68489	transcription start site region 68489	911 bp downstream
Tssr68490	transcription start site region 68490	655 bp downstream
Tssr68491	transcription start site region 68491	456 bp downstream
Tssr74249	transcription start site region 74249	1641 bp upstream
Tssr74250	transcription start site region 74250	331 bp upstream
Tssr74251	transcription start site region 74251	290 bp upstream
Tssr74252	transcription start site region 74252	205 bp upstream
Wee1	WEE 1 homolog 1 (S. pombe)	Intron