rs212929163 SNP Detail

Summary

• ID
  rs212929163
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:131645973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATAGAGC CTTGGGAGTC
  TGGGTTCATC TTGTGAAACA GGGCTCACAC TCAACTGCTC CCAGTCCGGC TCTACCATTC
  TGCTAGGATG GAGCAGGACC ACACTCTGTC CTTTGGACAA CTCTAAAGTC TTAGCTGACC
  GAGCTGATAC ACCTCTAGGT TAAAGTCACT AGGGACAGGG GTGTACAGAG CACACTGCCG
  S
  CAGCTGTCTC CTCTAGAGAT GGCTCGGGCT GCACACGCCC TCCTGGTTTA AAGAGAAGAT
  GAGGATTCCA GACCCTGCAC ATGGTAGGGC TGTGCCCGCT TGTCTTCTCG TTTTTTTTCC
  TGTGTGTGTG CGCGCGCGCG GGCGTGCACT CTTCTCCAGG ATGGCCTGGG GTGACGGTGT
  CACATTTCTG GCTTCTACCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321329089	CHEV_4_131474577	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212929163					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131645973 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14946	CpG island 14946	1899 bp distal
Cpgi14947	CpG island 14947	1049 bp proximal
Gm12992	predicted gene 12992	within coordinates
Rr85750	regulatory region 85750	1373 bp distal
Rr85751	regulatory region 85751	773 bp distal
Rr100128	regulatory region 100128	within coordinates
Tssr39357	transcription start site region 39357	1906 bp upstream