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rs212945013 SNP Detail
Summary
  • ID
    rs212945013
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:171076270 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGTGCCTTC TCCTTCTGCC
    AGCACCCCCC TCCCCACGTG CTGTAGCTGC CACTCTGTGG CCCTTTGTCT TTCACTGCTT
    AGTCACACTC TTTGTTCTCA GCTCAGATGG GGGGATGGAA AGGGGTAATA AGAGTATCCT
    GGTGACAGCT CCTCTTGCCC CTGTCCCTTC TGGTCCCTCA TCCCTTGTGT GATTGACTCC
    Y
    CCTGCCTCAG CCCCTCTGCT CAGGACCAGG GAGGGTCAGG GCATGTGATG GGTCAAGAGG
    TGAGACTGGA AATCACCAGA GGGTGGGTAG TTCAGGAAGT GATAGGCACC AGGACAGGTA
    TTAGTGACGG GAGCAGGAAG GGAGGGGGAA GAGGAAGCAT TCTGAGGAAT ATGATGTGGG
    GGACAGGAGC TGACCAGGCA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss352383307 MGP_WTSI_1_173178832 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs212945013 SNP T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss352383307 MGP_WTSI_1_173178832 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:171076270 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Adamts4 ADAM metallopeptidase with thrombospondin type 1 motif 4 1720 bp upstream
Cpgi1016 CpG island 1016 1181 bp distal
Gm71631 predicted gene, 71631 within coordinates
Ndufs2 NADH:ubiquinone oxidoreductase core subunit S2 within coordinates
Rr372446 regulatory region 372446 254 bp downstream
Rr423259 regulatory region 423259 1089 bp distal
Rr423260 regulatory region 423260 1541 bp distal
Rr423261 regulatory region 423261 1014 bp distal
Rr423262 regulatory region 423262 within coordinates
Rr423263 regulatory region 423263 1128 bp proximal
Rr423264 regulatory region 423264 1408 bp proximal
Rr423265 regulatory region 423265 1733 bp proximal
Tssr10000 transcription start site region 10000 1324 bp downstream
Tssr10001 transcription start site region 10001 1715 bp upstream
Tssr10002 transcription start site region 10002 1854 bp upstream
Tssr15023 transcription start site region 15023 1580 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory