rs212945564 SNP Detail

Summary

• ID
  rs212945564
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89814253 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACATATGA GATACACTTG TCCTAAATAT
  TATGCAGCTA CAGGTTTTAC AAGTATAACA ATAGCAATTT CATTTGATTT GAGGGAATTT
  ATGGTTCTAT TATTTGTGCT TGAGTTCTGA GATATGCCTT CCCCCCCCCC CCCcacacac
  M
  cacacacaca caATTTTTAA CCTAAAACca gagtttctct ttagtcctgg ctgtcctgga
  atttactcta tagaccaggg tgaccttgaa actcagagat ctgaatgcct atgcctccca
  agtgttagaa ttaaaaggtg tgtaccacca                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322314348	CHEV_7_97313555	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212945564					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89814253 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67720	transcription start site region 67720	1971 bp downstream
Tssr67721	transcription start site region 67721	1888 bp downstream
Tssr67722	transcription start site region 67722	950 bp downstream
Tssr67723	transcription start site region 67723	460 bp upstream
Tssr67724	transcription start site region 67724	1007 bp upstream
Tssr67725	transcription start site region 67725	1052 bp upstream
Tssr67726	transcription start site region 67726	1065 bp upstream
Tssr67727	transcription start site region 67727	1129 bp upstream