rs212950487 SNP Detail

Summary

• ID
  rs212950487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128768910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTCCCAT CCCCCTCTTA
  GGTTTTGAGA CAGGGCTGCA CTCTGTAGCT CTGACTGGCC TGGAACTCTC CCTGTAGACC
  AAGTTGCTTT CGAGATGACA GAGATCTTCC TGGCTCTGCC TATTGAGTGC TGGGAATATA
  AGCGCGTCCT ACCACACCCA GCTTGCCATC CTTTTTTTGT TGCGTTGGAA ATGACCAGTC
  Y
  CTGGAAGGAC CTGATAGCAG GATCTTTGTC TCTTAGGTCC AGTGTCTTTC ATTTTTGCCC
  CCTTTTAGCT CTCTCTTCCC TCTCCACAGT TTAACTTGCA TTTCTTATTT TACTCTTTTT
  CTTTTTCCTT CACTGCAGAC TTTGAGCTAA ACTTGACCTT CCTCCTGTTC TTCATTCCCT
  TCTTTCCATT TGCTCCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536804	CHEV_10_128370097	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs212950487					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128768910 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	710 bp proximal
Itga7	integrin alpha 7	735 bp upstream
Rr441373	regulatory region 441373	1234 bp distal
Rr441374	regulatory region 441374	284 bp proximal
Tssr96480	transcription start site region 96480	710 bp upstream
Tssr96481	transcription start site region 96481	735 bp upstream
Tssr96482	transcription start site region 96482	741 bp upstream