rs212959846 SNP Detail

Summary

• ID
  rs212959846
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164907174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACAGAGA CAGAGAGAGA
  CAGAGACAGA GAGAGACAGA GAGAGACAGA GACAGAGACT CAGAGACAGT CAGAGAGACA
  AAGATAGAGA CAGAGAAAGA GACAATCAGT GAGAGACAGA GGGATAGAGA GAGACAGAGA
  GTCAGAGAGA CAGAGACAGA TAGAGAGACA GAAAGACAGA GACAGAGAGG TGGGGGGAGG
  R
  GATAGGGGGA GACAGAGGGA CAGAGAGACA GAAGGACAGA GAAACTGCTA ATAAACAAAC
  ACATTGACAT ACCACTCCCC TCTGCCATGA TACACATATG CACACACACA CATACACACA
  CACACACACA CACACACACA CACACACACA CACACACACA CACACACACA CCACAGTGGT
  TTCTCTTGTG GTTATAGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356446764	MGP_WTSI_2_164890754	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212959846					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356446764	MGP_WTSI_2_164890754	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164907174 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cd40	CD40 antigen			Intron
				Noncoding-Transcript-Variant
Rr569806	regulatory region 569806			440 bp distal
Tssr21707	transcription start site region 21707			1685 bp downstream
Tssr21708	transcription start site region 21708			1091 bp downstream
Tssr21709	transcription start site region 21709			1049 bp downstream
Tssr21710	transcription start site region 21710			315 bp downstream
Tssr21711	transcription start site region 21711			252 bp downstream
Tssr21712	transcription start site region 21712			229 bp downstream
Tssr21713	transcription start site region 21713			447 bp upstream
Tssr21714	transcription start site region 21714			1405 bp upstream
Tssr21715	transcription start site region 21715			1451 bp upstream
Tssr21716	transcription start site region 21716			1505 bp upstream
Tssr21717	transcription start site region 21717			1592 bp upstream
Tssr21718	transcription start site region 21718			1638 bp upstream
Tssr21719	transcription start site region 21719			1729 bp upstream
Tssr21720	transcription start site region 21720			1932 bp upstream
Tssr21721	transcription start site region 21721			1975 bp upstream
Tssr27603	transcription start site region 27603			111 bp downstream