rs212967242 SNP Detail

Summary

• ID
  rs212967242
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129207622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTGTAAT TCTCAGAGCT
  TTGTGAGTGC TAGATCAACA CTCTATCTCA GAGTATATCC CTGGCTCTAT ACTGGTGGTA
  TTGGCATTTA ATCTAGGCTC CTTTACTATA GTCAGCAGCT TCAGAGAAGC AACCCCCAGA
  TACTCCAATC TACTCTCATA GACACAGATG TTTCTATTGG ACCTATTCTT TCTGATCTAT
  Y
  CACAGACAGT TCCACAGACC CTGAACAGCA AGGAAACAGC CAACTCTCCT AAGACTGGAC
  CAACATCCCC CTACCCATTT TCCTAGGCTT CCCAGAGATA CATTGCACCA AAGTCAGCAG
  GGAGTAGCTA AAGAACATGA CGACCCTACT CCTGCTCCAT GATCACCTCT TTCTAAGTTT
  TCCTTTTTAA ATTGAACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370046229	MGP_WTSI_6_129180677	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212967242					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370046229	MGP_WTSI_6_129180677	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129207622 () rs orientation: forward

Symbol	Name	Function Class
2310001H17Rik	RIKEN cDNA 2310001H17 gene	1964 bp downstream
Gm47861	predicted gene, 47861	within coordinates
Rr399972	regulatory region 399972	1032 bp downstream
Tssr59119	transcription start site region 59119	1276 bp downstream
Tssr59120	transcription start site region 59120	1244 bp downstream
Tssr59121	transcription start site region 59121	146 bp downstream
Tssr59122	transcription start site region 59122	112 bp downstream
Tssr59123	transcription start site region 59123	61 bp downstream
Tssr63549	transcription start site region 63549	1540 bp upstream
Tssr63550	transcription start site region 63550	1414 bp upstream
Tssr63551	transcription start site region 63551	366 bp upstream