rs212989940 SNP Detail

Summary

• ID
  rs212989940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58659635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGGGTG TAATGGCATC
  CTTCAGTGGG ATGACTGTGA GGCTTCAGTC AGAGAAGTCA GTCATCTTAT TCAGCATCAG
  GCACATAGTA AAGTCTAGAG AAATTCAGTC TTCACAACAG CCATTGCTCT GCCTTTATCC
  TGGGCTTTGC ACCACTCCAG AGCTCTTTTT TTGAGTTGTT CCTTCCTGGA ATAAGTAGCA
  Y
  ACCAGACTAC AGCCATCACA TCACTGATAG TTTGTGTGAT GAGCAATTTT ATGAGTAATT
  CCTACATCAC AGAAATCCAG GATGGTCCTC AAACATAATT CAGACATCCA TATCTTCTGC
  CAAGGTGAAG ATTCAGTTTG GCCCTTGTAT AAAACTTAAA AATTTTCCCA CCCAAAGCGT
  GAAGACAAAA GGTTGCTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402923712	MGP_WTSI_19_58745693	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs212989940					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402923712	MGP_WTSI_19_58745693	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58659635 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	within coordinates
Tssr5571	transcription start site region 5571	1918 bp upstream
Tssr157258	transcription start site region 157258	996 bp downstream
Tssr157259	transcription start site region 157259	848 bp downstream
Tssr157260	transcription start site region 157260	835 bp downstream
Tssr157261	transcription start site region 157261	773 bp downstream
Tssr157262	transcription start site region 157262	742 bp downstream
Tssr157263	transcription start site region 157263	498 bp upstream
Tssr157264	transcription start site region 157264	526 bp upstream
Tssr157265	transcription start site region 157265	582 bp upstream
Tssr157266	transcription start site region 157266	1869 bp upstream
Tssr157267	transcription start site region 157267	1883 bp upstream
Tssr157268	transcription start site region 157268	1941 bp upstream
Tssr159956	transcription start site region 159956	605 bp upstream
Tssr159957	transcription start site region 159957	529 bp downstream
Tssr159958	transcription start site region 159958	629 bp downstream
Tssr159959	transcription start site region 159959	1912 bp downstream
Tssr159960	transcription start site region 159960	1966 bp downstream