rs213001993 SNP Detail

Summary

• ID
  rs213001993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106863925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGTCCCA CCTCTTGCTG
  CAGTCCGGCG AGACTCCTGG GACGAATCCA TTCTTTCTCC TACTTCCTCT CTAGCAGGCA
  CTCTGAGTCC TCCGCAAAAG AATGTGCAGG ATCAGAGGCC TCTTTCCATT CTGCAAGGGT
  CACGCAAGAC CCATGGAATT CAACAGGAGG CAATCTAGGG ACTATAAAAG GTCGCGACGT
  Y
  TGGCTTGAGG TTAATGGAAG TTACAAAGGG TCAAAAGCCG ACAGTGAGCG CTACCAGGTA
  TCCACTGGAA GTCGGTGAGA GAGATCCGTT GGGGAAAGGG AGGGAGGTAA AGATCAAGGG
  TTCTTAGAAC TGTGGGCGGT CACTAGAGAT CACAGAGAAG GACGTGCCCA TACAGGTGTC
  GGGTCGGCGT AGTGCCGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375925168	MGP_WTSI_8_108661193	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213001993					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375925168	MGP_WTSI_8_108661193	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106863925 () rs orientation: forward

Symbol	Name	Function Class
1810019D21Rik	RIKEN cDNA 1810019D21 gene	within coordinates
Cpgi20965	CpG island 20965	within coordinates
Cpgi20966	CpG island 20966	717 bp proximal
Esrp2	epithelial splicing regulatory protein 2	319 bp upstream
Rr669096	regulatory region 669096	1723 bp distal
Rr669097	regulatory region 669097	501 bp distal
Rr669098	regulatory region 669098	within coordinates
Rr669099	regulatory region 669099	1172 bp proximal
Tssr79219	transcription start site region 79219	1862 bp downstream
Tssr79220	transcription start site region 79220	1836 bp downstream
Tssr79221	transcription start site region 79221	1813 bp downstream
Tssr79222	transcription start site region 79222	1781 bp downstream
Tssr79223	transcription start site region 79223	1723 bp downstream
Tssr79224	transcription start site region 79224	1404 bp downstream
Tssr79225	transcription start site region 79225	1340 bp downstream
Tssr79226	transcription start site region 79226	219 bp downstream
Tssr79227	transcription start site region 79227	1115 bp upstream
Tssr82757	transcription start site region 82757	417 bp upstream
Tssr82758	transcription start site region 82758	392 bp upstream
Tssr82759	transcription start site region 82759	75 bp downstream