rs213007288 SNP Detail

Summary

• ID
  rs213007288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:41385348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAAGGGT GTGGTAGCCG
  TGGGAGATTA GAAGCACCCA GCAATTGTAC AAAAAGGCAG GTTGAAAATT AAGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT TTCATCTGTG GATCCAAGGA
  AACCTGGCTG GGGCTGGTAT TGTGGTGTGC CTAGAGCTTA AAGTGGGGTA GCAAAAGCTA
  Y
  ATGCAATATT ACACCCCCTC TCAGTTGTTA AAATATTAGT ATATAGTGAT TTATTGTTCC
  TCTATTCAAT AAATAAATCA TGTTTAAAAA ATGATAATTG TGTTTAAGCA CTAGTCTGTT
  TTTATATATC TATTTCTGGA TAGTGATTAT TATTATTAGA GTAGGCAAGG GAAGATAGAA
  TGTAACGCCC TGAACAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320246518	CHEV_2_41350856	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213007288					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:41385348 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D2Mit371	DNA segment, Chr 2, Massachusetts Institute of Technology 371			30 bp distal
Gm74545	predicted gene, 74545			within coordinates
Lrp1b	low density lipoprotein-related protein 1B			Intron
				Noncoding-Transcript-Variant