rs213011033 SNP Detail

Summary

• ID
  rs213011033
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9674217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATAAAA TATCAATGCC
  AGGCCGATCG GGGCTCCGAC CTCGTCCAGC TCCCAAGTTC CCCACCCTGC CCAGAGAAGC
  GCTCCTTCCT TGCCTACCGG CACGCGGGAC CACGCATCCG CCCGGCCTCT GAGCACCGAC
  AGGCCGCCGG GCGCCGCTGA GCCGCTGAGC CGCTGAGCCG CAGTTCCGCG CGCTGCCCAC
  S
  GCCGCCTGAC ACACCCCTCC CGGCCCGCGC CGCTGCGCTC GGCCTCCCCG GCGCCCCGGC
  GCCCCGCCGA GCCCGCTGCG CCCCCCACCG ATCCCCGGCA CCTCGCACGC ACCTTCACCG
  CGCCTCGGGC GGGGCCCTTG GGAAGCGCAC GGCCGGGTCC GAGGGGCACG AAGCGCTCCT
  CAGCGTCCTC GTCGTCCTCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356928741	MGP_WTSI_3_9609157	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs213011033					SNP	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356928741	MGP_WTSI_3_9609157	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9674217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12974	CpG island 12974	within coordinates
Gm56803	predicted gene, 56803	174 bp downstream
Rr69501	regulatory region 69501	1384 bp proximal
Rr78141	regulatory region 78141	within coordinates
Tssr28346	transcription start site region 28346	333 bp downstream
Tssr28347	transcription start site region 28347	316 bp downstream
Tssr32578	transcription start site region 32578	876 bp downstream
Tssr32579	transcription start site region 32579	917 bp downstream
Tssr32580	transcription start site region 32580	933 bp downstream
Tssr32581	transcription start site region 32581	1076 bp downstream
Zfp704	zinc finger protein 704	within coordinates