rs213016196 SNP Detail

Summary

• ID
  rs213016196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177809691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGAGAGA TGGCTTGCCC
  ACTAAAAGCA CTTGTTGCTC TGCAGAGGAT CTCAGTTTGG TTCCCAACAC TCAGGTCAAG
  CAACTTACAG CAGCCTATAA CTTCGGTTGC AGAGCATTCC TGCCCTCTGT CCTCTTTGGT
  CACCTGCACC CCTCGATGTC TTTGTCTCTG TCTCTGTCTT TCTCTCTCTG ACTCTCTCTT
  Y
  CACTCTTTCA CACACAGAGA CACACAAACA CACACACAAT TGATAAATCT AAAATGTAAA
  ATAGATATTC AATCTTAGTT AACTGAAAAC TCAGGATGTC TTCTGACCAG TTAACTGTCT
  GTCCACAGAT CACCTCTTTG CTCATTATGT TCTAGCCACA GAGAACTTTT ATTTTGTTCC
  TTAAATACAG AAAACATGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss352531608	MGP_WTSI_1_179912256	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs213016196					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352531608	MGP_WTSI_1_179912256	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177809691 () rs orientation: forward

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	1298 bp upstream
Cpgi1085	CpG island 1085	963 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr14372	regulatory region 14372	1891 bp distal
Rr25806	regulatory region 25806	434 bp distal
Rr29061	regulatory region 29061	709 bp proximal
Rr396636	regulatory region 396636	919 bp upstream
Tssr10371	transcription start site region 10371	1302 bp upstream
Tssr10372	transcription start site region 10372	1341 bp upstream