rs213027985 SNP Detail

Summary

• ID
  rs213027985
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112978004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTCGTAG ACCTGGTCAC
  TCCCGCAGCC ATCACGTCGC TCGCCTGAGT CCCTGAGAGG GGCACAGCCT GTGCGCCGCC
  GCGCGCGCTC GCTCCCGCGG CTGGGCGCCG GAGACGCCCT GGGGCGCGCG CCTCACTTCC
  GGTGGGCGGT GATTGGGTGC GCCGCGCGAG CCCTGCCCCG TCGACCAATA GGCGGCGCGG
  K
  GCGGCAGGGG GCGGGGCGCG GGCGCAGCCT GGACACCGCC CGCGGGCCTG CCGGACTCCC
  GCCGCCCGCC GGCGCCATGT GACCGCGCCG CCGCCCTCCG CGCGCCCGGC CCGCCCGCCC
  GCCGCGCTCC CGCGGCCCGG CGCAGCCCCA GGCCGCCGAG GGACGGCGGG GCCGGCGCCA
  TGGCCGAGCG GGGCCGCCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss387397473	MGP_WTSI_12_114252595	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs213027985					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387397473	MGP_WTSI_12_114252595	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112978004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5198	CpG island 5198	within coordinates
Gm61130	predicted gene, 61130	76 bp upstream
Pacs2	phosphofurin acidic cluster sorting protein 2	124 bp upstream
Rr473706	regulatory region 473706	87 bp distal
Rr473707	regulatory region 473707	within coordinates
Rr473708	regulatory region 473708	within coordinates
Rr473709	regulatory region 473709	298 bp proximal
Rr473710	regulatory region 473710	1720 bp proximal
Tssr115451	transcription start site region 115451	1 bp upstream
Tssr115452	transcription start site region 115452	118 bp upstream
Tssr115453	transcription start site region 115453	131 bp upstream
Tssr115454	transcription start site region 115454	162 bp upstream
Tssr115455	transcription start site region 115455	175 bp upstream
Tssr117933	transcription start site region 117933	121 bp upstream