rs213033262 SNP Detail

Summary

• ID
  rs213033262
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144620070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAAACTGAT TTCTTCAATA AACGAGTGCT
  TCATTCGCTC ACCACAATTT TCTAAAATTG CCCTTTTGAT CTGAGGCGTC CAATCCTGCC
  ACAGTGTAAG TTTTTATTTT GGAACACCAA AATCTATAGT CTCAGTACAT ATATATATAT
  W
  TTTTTTCTTT ACATGACTGG AAACACAAAC CCTTCTCTCT TGCTTTACTT CATGAAAGGG
  AAAGGGCTTC TTTACACATA TTTTTGTGTT TGTTAACATT TTGAGAGAAA CAGAATCTTA
  GTCAATGATC TGAAATTTTG TGAATTTAAA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322064204	CHEV_6_144622864	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213033262					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144620070 () rs orientation: forward

Symbol	Name	Function Class
Rr139299	regulatory region 139299	331 bp proximal
Rr143322	regulatory region 143322	75 bp distal
Rr148311	regulatory region 148311	931 bp proximal
Sox5	SRY (sex determining region Y)-box 5	within coordinates
Sox5it	SRY (sex determining region Y)-box 5, intronic transcript	1594 bp upstream
Sox5os3	SRY (sex determining region Y)-box 5, opposite strand 3	within coordinates
Tssr59516	transcription start site region 59516	1493 bp downstream
Tssr59517	transcription start site region 59517	1455 bp downstream
Tssr59518	transcription start site region 59518	1444 bp downstream