rs213034147 SNP Detail

Summary

• ID
  rs213034147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36928894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATAATAG CTCATAGTTT
  CTGTGGGCAA GGAATTGAGG GGTGGTCACC TTGGAGGTTC TGGACCTGGG TCTCTAATAA
  AGCCGCAGTT GTGGAATTGA CTAGGTTTGC ATTCGTTGGG GCTTAAATAA AGTTAGAAGG
  TCCTCTTCCA GGCCCTCCCG TGCCTGTGGT TCGGAGGCTC AAGTTTATTC TCTGGGCCTG
  Y
  TTGTAAGGTC ATTCACAATG AAGTGTAAAG AGGGACTTTC CCTAAAGCAA GTCATGTGAA
  GTTTGTCTGT TTTGTTAATT GAGACATTAA TTAGACATCA TCTAATTTTA CCTAGAGATT
  TGAGTTTCTT TCCTGAAAAC AGTAAGATCC TTAGAAACCA GATTGACCCA TGTGCTGTTT
  CTTCCCATTT GTCAGCTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss400282951	MGP_WTSI_18_36955495	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs213034147					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400282951	MGP_WTSI_18_36955495	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36928894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	1522 bp distal
Rr405606	regulatory region 405606	1859 bp downstream
Rr536210	regulatory region 536210	1955 bp distal
Tssr150673	transcription start site region 150673	1992 bp downstream
Tssr150674	transcription start site region 150674	1904 bp downstream
Tssr150675	transcription start site region 150675	713 bp downstream
Tssr150676	transcription start site region 150676	188 bp upstream
Tssr150677	transcription start site region 150677	219 bp upstream
Tssr150678	transcription start site region 150678	679 bp upstream
Zmat2	zinc finger, matrin type 2	Intron