rs213035838 SNP Detail

Summary

• ID
  rs213035838
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:38056542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAATTGT ATAGTTATGC
  TTTCAACAAG GTATTTAGAT CTTTGTGTAG TCCCATTTTC TCAACTAATA AAATTAGACA
  ATAGACTAGT TGGTTTCTAA AGTTTTTCAA CACTCTAATT TCTGCTGTTT TAAGTGAAAA
  ATGTATAAAG GTCTACTTAC TTAGGTTTTC TGATAGCTTG TTTTATACTT TAGTTATTCA
  W
  TGTTTTATGA AAATAATTCC ATTCAGAAAA ATGCTCATGT GCATATGCAC AGATGTTCAT
  TACTTGCAGA AGTTACTTTT TTCCCTTCCC TGCCTAGGCT GTTTGCTTGT CTGTTTTAGG
  GGTAGGGCTC TTGATTCATA CCTTCTGGTT TTGGCATAGT GATCTTTATG GAAGAAGACA
  GACAGTTTGG TAGGTAGGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349287064	MGP_WTSI_1_38074306	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213035838					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349287064	MGP_WTSI_1_38074306	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38056542 () rs orientation: forward

Symbol	Name	Function Class
B230213L16Rik	RIKEN cDNA B230213L16 gene	536 bp downstream
Eif5b	eukaryotic translation initiation factor 5B	Intron
Tssr6335	transcription start site region 6335	387 bp upstream
Tssr6336	transcription start site region 6336	404 bp upstream
Tssr6337	transcription start site region 6337	585 bp upstream
Tssr6338	transcription start site region 6338	606 bp upstream
Tssr6339	transcription start site region 6339	1518 bp upstream
Tssr6340	transcription start site region 6340	1566 bp upstream
Tssr6341	transcription start site region 6341	1607 bp upstream
Tssr6342	transcription start site region 6342	1637 bp upstream
Tssr6343	transcription start site region 6343	1654 bp upstream
Tssr6344	transcription start site region 6344	1688 bp upstream
Tssr6345	transcription start site region 6345	1707 bp upstream
Tssr6346	transcription start site region 6346	1770 bp upstream
Tssr6347	transcription start site region 6347	1800 bp upstream
Tssr6348	transcription start site region 6348	1948 bp upstream
Tssr6349	transcription start site region 6349	1987 bp upstream