rs213038593 SNP Detail

Summary

• ID
  rs213038593
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118530846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCAAAC CAGTCTAGCT
  TTGGAGGTAG CCCCCTCCCC TGCTGTCCAA GTGGTCTGGA GGTGTCACAG GTAAAACCCA
  GAGCATGTCC TCTTGGCTTC AGGGCTCTCT AGCACTCAGC CCCAGTTTAC CTTTTTTTTG
  CCTTCTACTT GCATGACACA GATGCTCTGA CTCAGCTGCC GTGCCCCTTC TCTCTGAGCT
  R
  CCGGGATCCA TGCTTTTCCA CCGCAGCCCT TGGGCTCCTG CTGCTGTCTC CAGCCCTTCA
  GTCATGTTAG GTCCAGCTCT TGTGTCTGCT TCCAGTCCTG CACCTCCTGC TTTCTCTTTG
  CATTCTTCCT GCCTTAAGGC TCCACTCCCT TCATGCTTGC TTTCATAATT TCTCTTTAAC
  TCAGATGACT TTGGGTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323216693	CHEV_9_118610896	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213038593					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118530846 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr688308	regulatory region 688308	1418 bp distal
Rr688309	regulatory region 688309	301 bp distal
Tssr87646	transcription start site region 87646	1570 bp upstream
Tssr87647	transcription start site region 87647	1597 bp upstream
Tssr87648	transcription start site region 87648	1613 bp upstream
Tssr87649	transcription start site region 87649	1657 bp upstream
Tssr87650	transcription start site region 87650	1699 bp upstream
Tssr87651	transcription start site region 87651	1717 bp upstream
Tssr87652	transcription start site region 87652	1994 bp upstream
Tssr91958	transcription start site region 91958	82 bp downstream