rs213047340 SNP Detail

Summary

• ID
  rs213047340
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115506602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTCTCTA GGATGATGAA
  GCAGCAGATG AGAATGAACA CCACTGAAGT CAGTTTAATG CCATGGTCCT TCTCCGCCCC
  GATGTTCAAC TTGCCTGTGT AGTTGTAATG CCGGACTATG ATATCATAGT TCCCATAGTC
  AGAGACTGAG CTGCGGAGAG CTTTAACCTC CGGGATGCTA GTGGACACCA TAGCTGCTAA
  W
  TGTGTCCCCA GGAGCCTGGG GTGGTATTTC TCCAGGCAAA CGCTAGAGGG CGAGGTTGAG
  TGAGCCTTCA GTTACAGCAA AGCCAGGTCA GCGAGCAATC CAATGCTTTT TTCTTTTATG
  GAGCTTTTCC TTGGCTGGAG AGGCCTCCGA GAAACAGCAG CCTTAAACAA GTTACAAAGA
  AAAGAATCAG GGAAAATGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359333848	MGP_WTSI_3_115415871	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213047340					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359333848	MGP_WTSI_3_115415871	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115506602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13724	CpG island 13724	402 bp distal
Cpgi13725	CpG island 13725	1691 bp proximal
Rr583584	regulatory region 583584	36 bp proximal
Rr583585	regulatory region 583585	1580 bp proximal
S1pr1	sphingosine-1-phosphate receptor 1	within coordinates
Tssr35268	transcription start site region 35268	1905 bp upstream
Tssr35269	transcription start site region 35269	1768 bp upstream
Tssr35270	transcription start site region 35270	1755 bp upstream
Tssr35271	transcription start site region 35271	1708 bp upstream
Tssr35272	transcription start site region 35272	1672 bp upstream
Tssr35273	transcription start site region 35273	399 bp upstream
Tssr35274	transcription start site region 35274	340 bp upstream
Tssr35275	transcription start site region 35275	86 bp upstream
Tssr35276	transcription start site region 35276	764 bp downstream
Tssr35277	transcription start site region 35277	840 bp downstream
Tssr35278	transcription start site region 35278	1827 bp downstream
Tssr35279	transcription start site region 35279	1849 bp downstream
Tssr35280	transcription start site region 35280	1901 bp downstream
Tssr35281	transcription start site region 35281	1936 bp downstream
Tssr35282	transcription start site region 35282	1980 bp downstream