rs213056629 SNP Detail

Summary

• ID
  rs213056629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93033428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGCAGA CACCTAGCTG
  TTCCTTCCAC CACTGTTCCC CTTTTGTGCC CTTGGCAGAC ATAATTAATC AAATTTGAGA
  TCCTGACAGA CAACACTAAT GGATTCAACA CGGTCCTGGC AGGGTCAGGC ATCTTGCAAC
  TAGTTGCTAA CCTAGCCTGC AGTTCAAGTT TGTGTGTGTG TGTGTGTGTG TGTGGGGGGG
  Y
  GTTGGTTGGT TGGTTGGTTG TGAACCTATT AGTCTGGGGT GTTTGTTTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT CTGTTGGTTG GTTGGTTGGT TGTGAACCTA TTAGTCTGGG
  GTGTTTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTCTGT TGGTTGGTTG
  GTTGGTTGTG AACCTATTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354849052	MGP_WTSI_2_93043240	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213056629					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354849052	MGP_WTSI_2_93043240	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93033428 () rs orientation: forward

Symbol	Name	Function Class
Rr561119	regulatory region 561119	1801 bp distal
Rr561120	regulatory region 561120	within coordinates
Rr561121	regulatory region 561121	847 bp proximal
Trp53i11	transformation related protein 53 inducible protein 11	1324 bp downstream
Tspan18	tetraspanin 18	mRNA-UTR
Tssr18989	transcription start site region 18989	1468 bp downstream
Tssr25280	transcription start site region 25280	206 bp downstream
Tssr25281	transcription start site region 25281	235 bp downstream
Tssr25282	transcription start site region 25282	254 bp downstream
Tssr25283	transcription start site region 25283	356 bp downstream
Tssr25284	transcription start site region 25284	571 bp downstream