rs213056746 SNP Detail

Summary

• ID
  rs213056746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91011345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTTTCC CCCTTGCTCC
  CAATAGAGGA CCCATAGGTA ATAGGATTCA GTTTTGTCTC CATAGCGACT CTGGCTCCCA
  GAACTATTTA TAGCAGAGTC ATAGCCCCTC CCCTGCTTGG TGACCAAACC ATGCTAGCAG
  CTGCTACTCC AAACCCAGCC ATGGCCTATA GCATCTCATT CCCCCTAGCC CTGGAGATGC
  Y
  GATTCCAAAG ACAGCACCTA CTAAGAATCA GGTTATCTCC GCTTCTGTCC GTGTTTTTTT
  TTTTTTTTTT AATCCCACGT TCAGCTTTTA ATAGAAATAG TTCTTCACCA TCAAGTTCCT
  GAGCATGCCA CACATTCAGT CATTTCTGGG GTTCATCACT CTTAATAATC CTAAACAATC
  CTCTTGTTCT CCCAACTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354809264	MGP_WTSI_2_91021157	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213056746					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354809264	MGP_WTSI_2_91021157	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91011345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	1119 bp proximal
Gm74571	predicted gene, 74571	1189 bp upstream
Madd	MAP-kinase activating death domain	within coordinates
Rr560660	regulatory region 560660	822 bp proximal
Rr560661	regulatory region 560661	1200 bp proximal
Rr560662	regulatory region 560662	1655 bp proximal
Rr560663	regulatory region 560663	1838 bp proximal
Rr560664	regulatory region 560664	1897 bp proximal
Tssr18868	transcription start site region 18868	1183 bp upstream
Tssr25161	transcription start site region 25161	1868 bp downstream
Tssr25162	transcription start site region 25162	1941 bp downstream