rs213064699 SNP Detail

Summary

• ID
  rs213064699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55254709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCTAATT TCAGGTGATG
  GCTGTCACTG CACAAATCCA AGCACTGACG ACAAAAGTTC GAGCTGGAAC GTATTCTACA
  GAGAAGGTAA GGGCTCCTGC ACAGGCTGGA GGGCCAGCTC CGTGGTTACG TCACCCGTCC
  AGGTGACGTA ACCACTTGGA TCCCAGCACT CGTGTCTACA TGACCCACAA TTCTAGCTCG
  R
  GCATCCCATA CACATGTGCC GTGTGAATGT ACATACACAT AAATAACTGT AAATCTTAAG
  GGGGGGGTAC TTGAAGAGGG AGGACCTCCT CATATGATGT GCTTGCTGGT TTGGTTTGGT
  TTTTACTGTA GGTTTGTTAT GTGGTGTATG TCCTAAGAGT TAGAGCTTCA TCTAAAAGGG
  GTAATGTGTG GGTTCTGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324641596	CHEV_14_55636089	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213064699					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55254709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6482	CpG island 6482	1158 bp distal
Gm63347	predicted gene, 63347	1451 bp upstream
Ngdn	neuroguidin, EIF4E binding protein	within coordinates
Rr369831	regulatory region 369831	1629 bp downstream
Rr492392	regulatory region 492392	1788 bp distal
Rr492394	regulatory region 492394	1462 bp distal
Rr492395	regulatory region 492395	970 bp distal
Rr492396	regulatory region 492396	1073 bp distal
Tssr125743	transcription start site region 125743	1681 bp downstream