rs213067888 SNP Detail

Summary

• ID
  rs213067888
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3771267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATCTCAT TAGAGTCTAG
  AATTAGAGAT TTGTAGCCTG TCTTTTGTAA TTATACACAT AGTCTGATTT ATCTTGTCCG
  AGTTTCATTT CTGTTGATTG CAAAAATATC TGACAGATAG CACAGAACTC CAGGACTCTT
  CTTCCTTATA CCACCAGGGA GGCCTTCTCC TCTCTACCTC TGAGGACGCA CCTCTGTCCC
  T
  CAGAAAGGCC CTCCCTCCCT GTCCATCAGG TACGGACCAT GCTCAACCTA CAATGCTCTG
  TTGAGCCTTC CTTGCTTCTG ATTTTCATCT ATAGCCTATT TGATCCCTTC TGAGAATTTC
  TCTGCAAAAT AATTAGCCAT CTTTTAAGAA CTATATTTTA GTGTGTGTGT GTGTGTAGTA
  GTAGTAGTAG TGGTGGTGGT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390442192	MGP_WTSI_14_19530943	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213067888					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390442192	MGP_WTSI_14_19530943	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3771267 () rs orientation: forward

Symbol	Name	Function Class
6820402I19Rik	RIKEN cDNA 6820402I19 gene	1398 bp downstream
Rr389165	regulatory region 389165	888 bp upstream
Ube2e2	ubiquitin-conjugating enzyme E2E 2	within coordinates