rs213074108 SNP Detail

Summary

• ID
  rs213074108
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:41384074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTATGGA TATTAGCCAC
  TCCCACATTG TGAGCTTGTA AGACTGATTG GTGAGACTAT TATTTTAACT GAACATTTTC
  TATTGACTAA CCTATAGTAC AGTTATTAAC TTTATAACCA TACTCCCATA GGCATGATAA
  TCCTGAGTAA AGTTTCAAAT AGGAACCATA TAATATAGAA ACAATTAAGC AATTGGTTTC
  W
  CCTGTTTTAG TTTATGCTCA AAGTTGCTAC CTTATAAAAT TATGAAAAAT TATACTACTG
  AGTCTGCTAC TAAAATCATA TTTCCTGGCT TCTCAAAAGG CTGAGGCAGA AGTTGACAAG
  ATAAAGATCT CCTGTGCTAC AAAGCAAGTT CAAGTACAGC TTAGTTATCA CAATAAAACT
  CTGTCAAAAA TATTTTAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320246501	CHEV_2_41349582	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213074108					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:41384074 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D2Mit371	DNA segment, Chr 2, Massachusetts Institute of Technology 371			1126 bp proximal
Gm74545	predicted gene, 74545			861 bp upstream
Lrp1b	low density lipoprotein-related protein 1B			Intron
				Noncoding-Transcript-Variant
Rr373095	regulatory region 373095			1730 bp downstream