rs213077594 SNP Detail

Summary

• ID
  rs213077594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:28093353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCAGGA AACCACTGTG
  CTCATGTGAT TTTCTATAAA ATCTGCTAAA ACTTATAAAT TAATTCAAGT TTGAAATTAT
  TTAAAAGGAT TGAATACAAA AAGTAAAATA TGGTTCATGT TTGTAGTTTA AAAAAGTAAA
  CAAGTTCCCA GCACTCAGGA GGCAGAGGCA GGCAGATTTC TGAGTTCGAG GCCAGCCTGG
  Y
  CTACAAAGTG AGTTCCAGGA CAGCCAGGGC TACACAGAGA AACCCTGTCT CGAAAAAACA
  AAAAACAAAA AAACAAACCA AAAGTAAACA AGTTATCATG ATTATGCCTT ATATCCTGCT
  TCTCACCGTT TTGTAAGAAA ACTGACCTTG TCCCTGACAC CTAAACATAA AACTTTTTTC
  CAAAACAGAC TCAGTTTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325123278	CHEV_16_28274687	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213077594					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:28093353 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fgf12	fibroblast growth factor 12			Intron
				Noncoding-Transcript-Variant
Tssr140647	transcription start site region 140647			288 bp upstream