rs213077993 SNP Detail

Summary

• ID
  rs213077993
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177152601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACATGCAA AGTGTTAGAT
  AAAAAGGCAA TTGCTTGTGG CTGGGGAAGG TAAGAGCATT CACTACTCTT CGAGAGGACT
  TGAGTATAGT TTCTAGCATG CACATGGCTG CTTACAACTC TATAATTCTA GTTCTGTGGA
  CTCCAACACC CTCTTCTGGG CTCCTTGGGT CCCAGGCATG CATGTGGCAC TCATATACAT
  W
  TACATGTAGG CAAAAAAATT CATATACGCA AAATAAAAAA ATATTTTTAA GGTAACATTT
  AGAAAACTAG ACTAATATCT CAATGTTTAT TTGGTAATCA CTTTACAGTT AAAGAACATC
  TTGCTTTTCT ACACAAGCAG AGTGCAAAGT CCAAGCATTT AAGACTCATT TGACAAATAG
  GCAATTGTAT AAGGCACATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320158864	CHEV_1_179255166	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213077993					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177152601 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1079	CpG island 1079	1789 bp distal
Gm36904	predicted gene, 36904	within coordinates
Rr423982	regulatory region 423982	1671 bp distal