rs213079748 SNP Detail

Summary

• ID
  rs213079748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123128911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTTTTTC CACCTGTCCC
  CAAATCTGCT CTTTGAATTT TTTTTTAAAA ATTCCATCCA TGCACGTTAT CGGTAGAAAT
  CTACGTAGAG ATGAGGCGAC AAACACCAAG TTTGTCACCA AACTGAAACT ACATCTACGT
  TGGCTCAGCT GCATTCTCTG GGCAGCCCTT CTAACCATCC CTGTGAAAAC CAGGGGCCAG
  Y
  TGGTGCTGTA ACGCAGTCCT GGGATATTTG GCCTAGCAAG CCTAAGGCCC TGGGTTCCAT
  ACCCATTGAC ATGGGGATGT GGACCACTTT ATCTGGCTCT TCTTGTGAGA AAGAATACGT
  TTGAAGGGGA TGTCTCATGG CCTTGTTGCT CTGCTTTGTA AGTGAGGATG CTGGGATTCA
  GAAAGGCAGA AACGACTCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366530176	MGP_WTSI_5_123440857	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213079748					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366530176	MGP_WTSI_5_123440857	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123128911 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16566	CpG island 16566	1315 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	within coordinates
Kdm2b	lysine (K)-specific demethylase 2B	1578 bp upstream
Rr620031	regulatory region 620031	1825 bp distal
Rr620032	regulatory region 620032	1700 bp distal
Rr620033	regulatory region 620033	1553 bp distal
Rr620034	regulatory region 620034	1052 bp distal
Rr620035	regulatory region 620035	907 bp distal
Rr620036	regulatory region 620036	32 bp distal
Rr620037	regulatory region 620037	within coordinates
Tssr48730	transcription start site region 48730	1596 bp downstream
Tssr48731	transcription start site region 48731	1567 bp downstream
Tssr48732	transcription start site region 48732	1533 bp downstream
Tssr48733	transcription start site region 48733	1482 bp downstream
Tssr48734	transcription start site region 48734	1236 bp downstream
Tssr48735	transcription start site region 48735	1109 bp downstream
Tssr48736	transcription start site region 48736	1086 bp downstream
Tssr48737	transcription start site region 48737	905 bp downstream
Tssr48738	transcription start site region 48738	79 bp downstream
Tssr48739	transcription start site region 48739	68 bp downstream
Tssr48740	transcription start site region 48740	23 bp downstream
Tssr48741	transcription start site region 48741	7 bp upstream
Tssr53171	transcription start site region 53171	1768 bp upstream
Tssr53172	transcription start site region 53172	1737 bp upstream
Tssr53173	transcription start site region 53173	1568 bp upstream
Tssr53174	transcription start site region 53174	1510 bp upstream
Tssr53175	transcription start site region 53175	558 bp upstream
Tssr53176	transcription start site region 53176	441 bp upstream
Tssr53177	transcription start site region 53177	385 bp upstream
Tssr53178	transcription start site region 53178	353 bp upstream
Tssr53179	transcription start site region 53179	319 bp upstream
Tssr53180	transcription start site region 53180	275 bp upstream