rs213080066 SNP Detail

Summary

• ID
  rs213080066
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29477460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCCTCC TCTTTCTTCT
  CTTATCTTTT GCATTTTCTT TTGAAAGGTG GTTTCCCTGA TATACCTAGC CTGGCCTTGA
  GCTCCCTATG TAGCTAAGAC TGAAGACTGG CTTTGAACTT GGCATCCTCC AGCCTTTGCC
  TAGAGTTGCC TGTGCCAGCA GGCCTGGCTT GAATTTCTAA ATCTTAGTTC ATTTACTTGG
  W
  ATGAAGTCAG AATTTCTTTT GATCCTTTCC TTCTTGAATG AGTCTTTTAA GGTAAAATAC
  TAACTATTAA ACACCCACAA AGCCTCAGAA TTATCTATAA ATGAGGGAGA TGGTGGCTTG
  TGAATGTTTG TAACATTCAT GTTGTGAATC TTCAGAGAAA GTAAGTCATC AGTGAGAAAC
  AATACATTTA TCATCTCATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382841093	MGP_WTSI_11_29427460	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213080066					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382841093	MGP_WTSI_11_29427460	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29477460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2674	CpG island 2674	734 bp distal
Gm57396	predicted gene, 57396	1076 bp upstream
Mtif2	mitochondrial translational initiation factor 2	within coordinates
Rr369145	regulatory region 369145	1057 bp downstream
Rr444173	regulatory region 444173	1087 bp distal
Rr444174	regulatory region 444174	993 bp distal
Rr444175	regulatory region 444175	315 bp distal
Rr444176	regulatory region 444176	1482 bp proximal
Tssr100719	transcription start site region 100719	1040 bp downstream
Tssr100720	transcription start site region 100720	986 bp downstream
Tssr107213	transcription start site region 107213	1081 bp upstream