rs213092916 SNP Detail

Summary

• ID
  rs213092916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106015244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTCCTAG TGTCCACGCA
  GGCTAACTCC AGCTGCAGGA GACCCAAGGC CCTCTTCTGG CCTCCACGGG CACATGCATA
  TACCCATACC CAGAAATAAT AAAAATAGAC CTCTAAAGCA AAAATACTAT AATCATTCCT
  TTCGCAAACT TAGATACCCT GTTTAGACTC CCCCCACCCC CACCCCGGCA TCCTCCTCCT
  Y
  CTCGGAGTCT TCCTCCACCT TACCTAGTGA TCGGCTGCTT AAAAAATGAC TTCTAGTCTC
  AGATCTCATT CACCCTCAAA CTGTATACTT TTCTGGATGT CTACTGACCA CTATATGGGC
  CAGTTCTTCC ATTTTCCCTT CGTTCATTCC ACCTACCTCC ACGTAATTAC CAGAATTCAC
  CTGTTTCTTT CACGTCTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss375909994	MGP_WTSI_8_107812512	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs213092916					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375909994	MGP_WTSI_8_107812512	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106015244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20922	CpG island 20922	278 bp proximal
Exoc3l	exocyst complex component 3-like	1312 bp downstream
Gm20163	predicted gene, 20163	571 bp upstream
Matcap1	microtubule associated tyrosine carboxypeptidase 1	Intron
Rr401088	regulatory region 401088	420 bp upstream
Rr401089	regulatory region 401089	846 bp upstream
Rr668838	regulatory region 668838	1486 bp distal
Rr668839	regulatory region 668839	within coordinates
Rr668840	regulatory region 668840	428 bp proximal
Rr668841	regulatory region 668841	582 bp proximal
Rr668842	regulatory region 668842	653 bp proximal
Rr668843	regulatory region 668843	779 bp proximal
Rr668844	regulatory region 668844	906 bp proximal
Rr668845	regulatory region 668845	986 bp proximal
Rr668846	regulatory region 668846	1242 bp proximal
Rr668847	regulatory region 668847	1645 bp proximal
Tssr79123	transcription start site region 79123	1371 bp upstream
Tssr82634	transcription start site region 82634	456 bp downstream
Tssr82635	transcription start site region 82635	472 bp downstream
Tssr82636	transcription start site region 82636	508 bp downstream
Tssr82637	transcription start site region 82637	853 bp downstream
Tssr82638	transcription start site region 82638	1263 bp downstream