rs213097086 SNP Detail

Summary

• ID
  rs213097086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105116606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG TGAGAAGGAT GTCACATGCT
  Y
  GGGTGACTGT CACACTGGCT ACCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321243330	CHEV_4_104932014	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213097086					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105116606 () rs orientation: forward

Symbol	Name	Function Class
Gm54244	predicted gene, 54244	1866 bp upstream
Rr596570	regulatory region 596570	985 bp distal
Rr596571	regulatory region 596571	1080 bp proximal
Rr596572	regulatory region 596572	1496 bp proximal
Tssr38160	transcription start site region 38160	850 bp downstream
Tssr38161	transcription start site region 38161	787 bp downstream
Tssr38162	transcription start site region 38162	1940 bp upstream