rs213101814 SNP Detail

Summary

• ID
  rs213101814
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110010119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAGGATT TGCAAATTTA
  GATACAGTCG CAGCAGGAAT ATGAACTGGG CACTCGACAA GCATGGGGGT GGGTGGTTTT
  CTTTGTCTCC TCCCATCTCA TTCAGAAAGC CAGCTTCCCA CTGTATTGAT AGATGTCTAG
  GGAAATGAAC AGAAAGGGGG AGGGAGATGT TAGACAGCAG CCCATCCCCC CACATCCACC
  Y
  CAAACCAGAG GCCAGGCTCA TTATGGCTGA ATAGGGCAAA GGATAGAAAC AAGTTTGAAC
  AGCAATGTAA ACATATACAG ACAGAGGCCT CAGGATACCC TGAAAACCCC TCTGAAGCAG
  CCTAGGTTCC CCATGGATTC CTCCCTCTTA GAAAGCAGCT GATCTGAACA CCACTATTCT
  GATAGTATGT CCCTCTGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255189	CHEV_4_109825527	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213101814					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110010119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14586	CpG island 14586	137 bp distal
Gm33070	predicted gene, 33070	within coordinates
Rr84118	regulatory region 84118	519 bp distal
Tssr38368	transcription start site region 38368	248 bp downstream