rs213102398 SNP Detail

Summary

• ID
  rs213102398
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84739045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGACGACCG TACAGGCACT
  TTTTAGGGTG CTGCCAAAGT GCCCGGCGAT CCTCCCTGGA CCCCGGTCCC CTGTGGGGGA
  TAGGCCCCTC CTTACTTGTT TGTCGCTGAG CGCTGCGATC CGTGGCTGCC TTTCGTGGAG
  CTGCTTCTTG AGGTCGCCGT TCTATGAAGA CACAGAGGAG CGGGCTCAGC CTGGCCGCCC
  S
  GGGGGGGGGG GCGAGCAGGC GAGCCCCGAG CCCCGCATCC CCACCACCCA CTGCCTGGCG
  GACCAAGCCG ACCCCAACGC GCCCCAACTT TCCGGGACCG CTTTCCTCAC ACGGGCCACC
  GTGCAATGTC GCGCGAAGCA GCTTACCTGT GGCTGCCGCC TCATTGGGGC AGCTCCCGGG
  GCGGGGCGGG GGCCGAGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394794276	MGP_WTSI_15_84685274	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	G	G	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213102398					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	G	G	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394794276	MGP_WTSI_15_84685274	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84739045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7469	CpG island 7469	within coordinates
Phf21b	PHD finger protein 21B	within coordinates
Tssr135727	transcription start site region 135727	226 bp downstream
Tssr135728	transcription start site region 135728	249 bp downstream
Tssr135729	transcription start site region 135729	286 bp downstream
Tssr135730	transcription start site region 135730	330 bp downstream
Tssr135731	transcription start site region 135731	1176 bp downstream
Tssr135732	transcription start site region 135732	1199 bp downstream
Tssr135733	transcription start site region 135733	1221 bp downstream
Tssr135734	transcription start site region 135734	1251 bp downstream
Tssr135735	transcription start site region 135735	1268 bp downstream
Tssr135736	transcription start site region 135736	1697 bp downstream