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rs213103223 SNP Detail
Summary
  • ID
    rs213103223
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:131196985 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGACTCTCCA CTTAAATGAA
    CCTGTGCGTT TCTGTTGCCT TGGGGCACAA GTGTCCATAT GTGTGTGTGC CCCCCAACCC
    CCATCCCCGG CCCCGGCTGA TCTTACCAAT TAGGTTGCAG GAAGGGTTGC TTCTGTCTAA
    AAATGGCCAA GGATCAGCAT TTCTTTGGAG TCGTTTCCAC ACCTTGTAGC AGTTTTCAGT
    Y
    AACCACGGTC GTTTTGGAGG GTGTCACTAG GCATCCAGGC AGCTGGCTAA ACCTCCAATG
    AGTTTAATTG ATAGAAATGC TTTTTATTGC ATTGCCTACT TCCCTTCTGG TTTTAAGTTT
    GAACGTGTAG GATTGTACAG ACTGTCCTAT GGGAGTTAAC ATAATCCACA AAAACAACAA
    TAAGCATTTC TGGTGTTTTG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss359739320 MGP_WTSI_3_131154188 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs213103223 SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss359739320 MGP_WTSI_3_131154188 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:131196985 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13839 CpG island 13839 286 bp distal
Gm36753 predicted gene, 36753 within coordinates
Rr585351 regulatory region 585351 820 bp distal
Rr585352 regulatory region 585352 within coordinates
Rr585353 regulatory region 585353 538 bp distal
Rr585354 regulatory region 585354 1325 bp proximal
Sgms2 sphingomyelin synthase 2 within coordinates
Tssr1055 transcription start site region 1055 1495 bp downstream
Tssr1056 transcription start site region 1056 1193 bp downstream
Tssr31735 transcription start site region 31735 1471 bp downstream
Tssr31736 transcription start site region 31736 819 bp downstream
Tssr31737 transcription start site region 31737 335 bp upstream
Tssr35709 transcription start site region 35709 1467 bp upstream
Tssr35710 transcription start site region 35710 1450 bp upstream
Tssr35711 transcription start site region 35711 1288 bp upstream
Tssr35712 transcription start site region 35712 1258 bp upstream
Tssr35713 transcription start site region 35713 989 bp upstream
Tssr35714 transcription start site region 35714 729 bp upstream
Tssr35715 transcription start site region 35715 693 bp upstream
Tssr35716 transcription start site region 35716 558 bp upstream
Tssr35717 transcription start site region 35717 482 bp upstream
Tssr35718 transcription start site region 35718 456 bp upstream
Tssr35719 transcription start site region 35719 213 bp upstream
Tssr35720 transcription start site region 35720 167 bp upstream
Tssr35721 transcription start site region 35721 51 bp downstream
Tssr35722 transcription start site region 35722 103 bp downstream
Tssr35723 transcription start site region 35723 162 bp downstream
Tssr35724 transcription start site region 35724 175 bp downstream
Tssr35725 transcription start site region 35725 213 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory