rs213103223 SNP Detail

Summary

• ID
  rs213103223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131196985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCTCCA CTTAAATGAA
  CCTGTGCGTT TCTGTTGCCT TGGGGCACAA GTGTCCATAT GTGTGTGTGC CCCCCAACCC
  CCATCCCCGG CCCCGGCTGA TCTTACCAAT TAGGTTGCAG GAAGGGTTGC TTCTGTCTAA
  AAATGGCCAA GGATCAGCAT TTCTTTGGAG TCGTTTCCAC ACCTTGTAGC AGTTTTCAGT
  Y
  AACCACGGTC GTTTTGGAGG GTGTCACTAG GCATCCAGGC AGCTGGCTAA ACCTCCAATG
  AGTTTAATTG ATAGAAATGC TTTTTATTGC ATTGCCTACT TCCCTTCTGG TTTTAAGTTT
  GAACGTGTAG GATTGTACAG ACTGTCCTAT GGGAGTTAAC ATAATCCACA AAAACAACAA
  TAAGCATTTC TGGTGTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359739320	MGP_WTSI_3_131154188	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213103223					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359739320	MGP_WTSI_3_131154188	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131196985 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13839	CpG island 13839			286 bp distal
Gm36753	predicted gene, 36753			within coordinates
Rr585351	regulatory region 585351			820 bp distal
Rr585352	regulatory region 585352			within coordinates
Rr585353	regulatory region 585353			538 bp distal
Rr585354	regulatory region 585354			1325 bp proximal
Sgms2	sphingomyelin synthase 2			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr1055	transcription start site region 1055			1495 bp downstream
Tssr1056	transcription start site region 1056			1193 bp downstream
Tssr31735	transcription start site region 31735			1471 bp downstream
Tssr31736	transcription start site region 31736			819 bp downstream
Tssr31737	transcription start site region 31737			335 bp upstream
Tssr35709	transcription start site region 35709			1467 bp upstream
Tssr35710	transcription start site region 35710			1450 bp upstream
Tssr35711	transcription start site region 35711			1288 bp upstream
Tssr35712	transcription start site region 35712			1258 bp upstream
Tssr35713	transcription start site region 35713			989 bp upstream
Tssr35714	transcription start site region 35714			729 bp upstream
Tssr35715	transcription start site region 35715			693 bp upstream
Tssr35716	transcription start site region 35716			558 bp upstream
Tssr35717	transcription start site region 35717			482 bp upstream
Tssr35718	transcription start site region 35718			456 bp upstream
Tssr35719	transcription start site region 35719			213 bp upstream
Tssr35720	transcription start site region 35720			167 bp upstream
Tssr35721	transcription start site region 35721			51 bp downstream
Tssr35722	transcription start site region 35722			103 bp downstream
Tssr35723	transcription start site region 35723			162 bp downstream
Tssr35724	transcription start site region 35724			175 bp downstream
Tssr35725	transcription start site region 35725			213 bp downstream