rs213103874 SNP Detail

Summary

• ID
  rs213103874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:93872760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTT CCTTCCTTCC TTCCTTCCTT
  Y
  CTTCCTCCCC CCCCCACCCC CCTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RIIIS/J	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss642579395	FVB_NJ_10_93499643	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	T	T	T	T	C	C	T	C	C	T	C	T	T	T	T	C	T	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RIIIS/J	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs213103874					SNP	C	C	C	C	C	C	C	C	T	T	T	T	C	C	T	C	C	T	C	T	T	T	T	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss642579395	FVB_NJ_10_93499643	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93872760 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2121	CpG island 2121			110 bp distal
Fgd6	FYVE, RhoGEF and PH domain containing 6			Intron
				Noncoding-Transcript-Variant
Gm49628	predicted gene, 49628			1097 bp upstream
Rr402165	regulatory region 402165			882 bp downstream
Rr437370	regulatory region 437370			1204 bp distal
Rr437371	regulatory region 437371			887 bp distal
Rr437372	regulatory region 437372			916 bp distal
Rr437373	regulatory region 437373			within coordinates
Tssr3327	transcription start site region 3327			523 bp downstream
Tssr95293	transcription start site region 95293			1427 bp downstream
Tssr95294	transcription start site region 95294			843 bp downstream
Tssr95295	transcription start site region 95295			777 bp downstream
Tssr95296	transcription start site region 95296			48 bp upstream
Tssr98985	transcription start site region 98985			1129 bp upstream
Tssr98986	transcription start site region 98986			1111 bp upstream
Tssr98987	transcription start site region 98987			1082 bp upstream
Tssr98988	transcription start site region 98988			149 bp upstream
Vezt	vezatin, adherens junctions transmembrane protein			1099 bp upstream