rs213126358 SNP Detail

Summary

• ID
  rs213126358
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153621768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATGTTGG CGAATATTAC
  CCACCATCCA GTTTAGGTCC GGTTTCCTGC GACAGCTGCC TAAGGCATGC TGGGGCACTC
  CGCCACACCC CCCCCCCCCA ACTTCCGTAC TGCTGGGTTA TTTCCCTTCA TCCTGTGGTA
  TTCTCATAGC TAGGAGCTAG CCCTATCCCA TCTCCTTCTC TTCCCCACCT TCTTCCCCAC
  C
  TCCCCAGATT TGTATTCCTT TTTTTTTTTT TTTTTCATTC TCTTACAAAC TACTTCCGGA
  CACTTGTTTG TTTTTCCTTC AGAGTTCACA ACCATCTGGT TCTGTCTGCA TTCCCTTCCT
  CAAGGTACTC TGTGGGGAAG GAGGACCCCA GTTCAATGGG TTGCATTACG GGCCACCTTG
  GTTTAAGGGA AGGTAGGACC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320565072	CHEV_2_153605584	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213126358					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153621768 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	494 bp distal
Efcab8	EF-hand calcium binding domain 8	83 bp upstream
Gm75501	predicted gene, 75501	115 bp upstream
Rr567738	regulatory region 567738	126 bp distal
Rr567739	regulatory region 567739	25 bp distal
Tssr20916	transcription start site region 20916	613 bp downstream
Tssr20917	transcription start site region 20917	597 bp downstream
Tssr20918	transcription start site region 20918	569 bp downstream