rs213133104 SNP Detail

Summary

• ID
  rs213133104
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156666405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATAATTGC CTGCTGAACT ATGATAGCCT
  GTTTCCAGAT GGTGCCCTTC CTTCAACCTG CACACAATCT CTCCTTGTTA GAGCTATTCA
  GCCTCCTGCT GATCCAGCTC CCCCAGCCCC ACCTCGGCAG CGAGAGGAAA TCCTAAGGAG
  R
  AGGTTCCTAC CCCCTCTCCT GGCTCCAGCT CTTTTCTAAT GACGTAATAT GTGGGCTGAA
  CTTGAGTCTA CTGAGAACGA GAGGGAATCA CTCTTCGGAC TGTGTGGACA GTCTGTCAGC
  TGCGGCTGGT TTCTGCACAT TTCCATGCAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320072859	CHEV_1_158768966	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213133104					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156666405 () rs orientation: forward

Symbol	Name	Function Class
Angptl1	angiopoietin-like 1	90 bp upstream
Gm68672	predicted gene, 68672	911 bp upstream
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	within coordinates
Rr421263	regulatory region 421263	within coordinates
Rr421264	regulatory region 421264	118 bp proximal
Tssr9579	transcription start site region 9579	68 bp upstream
Tssr9580	transcription start site region 9580	80 bp upstream