rs213138975 SNP Detail

Summary

• ID
  rs213138975
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96321228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGCCAA AAGAGCAGTG
  GGAACTGTGG CCATGGGGCT GTCATTGACT GCTTTTTCTT TTTGTTTGTC TTGAGACCTT
  GTTTCCGGTA GTCCAGACTT GCTTCAAATC TAAAAATGTA GCCAAGAATG AACTTGAACT
  TTGGTATTCC CGTCTTATTC CCTAAGAGCT GGGATCACAG GTGTGCCCAC CATACCCAGT
  Y
  TGGGAATAGA ACCCAAGGCT TTGTGCATCC TAGACATCCA CTCTTCCAAT GACTCCTGCT
  TCCCTCTCTT TCTTTTTGAA ACAGGAGCTC ACTAAGTAGC CCAGGCTGGC CTGGAACTTG
  TAATTCTCCG GTCTCAGACT CCCAAATTGG GAGGGGGCTA TACACTTATC ACTTGAGCCC
  CCTCCCCTTT TCCTTCTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323109002	CHEV_9_96339594	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213138975					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96321228 () rs orientation: forward

Symbol	Name	Function Class
BC043934	cDNA sequence BC043934	within coordinates
Cpgi22163	CpG island 22163	1949 bp distal
Cpgi22164	CpG island 22164	956 bp distal
Gm50488	predicted gene, 50488	within coordinates
Gm68666	predicted gene, 68666	334 bp downstream
Rr368835	regulatory region 368835	852 bp downstream
Rr684963	regulatory region 684963	1485 bp distal
Rr684964	regulatory region 684964	135 bp distal
Rr684965	regulatory region 684965	1337 bp distal
Tssr90963	transcription start site region 90963	949 bp upstream