rs213141916 SNP Detail

Summary

• ID
  rs213141916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59838971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTCACCAG CGTCATCCGT TCTTCCTGCC
  AGTCCCGGGG GTCCTCGTTG GTGTTTTGAC CTCTCTCTGT CATGTGAACT AGAAAGATGA
  CTGGAGTAGA TTCCCTAATC CTGACTACTC AATTTAGCTT TCCCGACACC CGTCGCCTAG
  Y
  AACGCCCGCC CGCCTACGCC CAGGGCGCAG ACTCAGAGTT TTTTCCCGCC CGGCCTCCCC
  GGGCGCGCAG TTGTGACGCA AGCACCCAGC GCCCCTCGGC AGCTGCTGGA CTCCTGGTGC
  TATGGCTTCC TCTGGGGTGG CGGGTGGGAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323699686	CHEV_11_59761647	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213141916					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59838971 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2971	CpG island 2971	within coordinates
Med9	mediator complex subunit 9	61 bp upstream
Med9os	mediator complex subunit 9, opposite strand	within coordinates
Rr448290	regulatory region 448290	11 bp distal
Rr448291	regulatory region 448291	within coordinates
Tssr101871	transcription start site region 101871	64 bp upstream
Tssr108257	transcription start site region 108257	44 bp upstream
Tssr108258	transcription start site region 108258	within coordinates
Tssr108259	transcription start site region 108259	30 bp downstream