rs213175575 SNP Detail

Summary

• ID
  rs213175575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36660948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTAGTC CATTTAACAG
  GTGGGGCCTC TAACCTTCTG TTTCCCTTTC CCTGCCTAGG TTCCACGAGC CTAGTTATTT
  ATTAGTTTCT TGTTTGTCCA AATGTGTCTC TGTGGCCCCT AGGCCCTAGG TTATATTGTT
  GATAACCAAA CAGTCCTGGA TTCGTGGTGT TAATATTTGA CACAGGACAA CCAAGAGCAA
  Y
  GGAATTTAGG GTGGGTATCA GTTACTCCTG TCTGTTTACG CAAAACATAG CAAGGTCAGA
  CTTGATGCAC ACACACACAA GTTGGGAACT TCTGAAAGGT CTAGGAAAGG CCAGATTAGT
  TTTACAAACA GGTCAGCAGG GGGTCAGAGA CCAAATAGAG GAGGAGAAGT CTGGCCTTTT
  CTGGAGCCAA CAGGCTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400278434	MGP_WTSI_18_36687549	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	C	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213175575					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	C	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400278434	MGP_WTSI_18_36687549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36660948 () rs orientation: forward

Symbol	Name	Function Class
Gm50199	predicted gene, 50199	1992 bp downstream
Rr536158	regulatory region 536158	1313 bp distal
Rr536160	regulatory region 536160	1743 bp distal
Rr536161	regulatory region 536161	within coordinates
Slc4a9	solute carrier family 4, sodium bicarbonate cotransporter, member 9	252 bp upstream
Tssr150628	transcription start site region 150628	250 bp upstream
Tssr150629	transcription start site region 150629	1310 bp upstream
Tssr150630	transcription start site region 150630	1328 bp upstream
Tssr150631	transcription start site region 150631	1348 bp upstream