rs213193056 SNP Detail

Summary

• ID
  rs213193056
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:156767267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCGGCCGT CGCCTCCGCT
  TCGCCCGCGG CTCCGAGGCA ATCGCTCGCC CAACCGAGCA GTCGGCGTCT CTCATTCAGC
  GCCTGCCGCC GGCGCTCGGG GGAGGGGAGT GCGCTGGATC CACCCCGGCC GCGCAGGGGG
  CGCGCGCCGG GCGGGCGGGG CGGAGCGGCG CGCGCACCAA CCGAGCGCGC TCGCGCGGCC
  S
  GGAACGCCGG GTCGCCGGGG TCTCGGCGCA GTCTGCGGGC GCCGGGCTAT GCCCCCCGAG
  GCCAACTGCC GCCCCGTACC GGTGTCCGAG GCGCGTGCCC CAGCCGCAGG CGCAGCACCG
  GCCGCAAGGA CGAGCCGCAG GGTTCAGGAC GGACAGGTGG GGCCCCGCGG CTGCTCCCCG
  CACGGGTCTC GTTGGCGCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352049342	MGP_WTSI_1_158869828	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213193056					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352049342	MGP_WTSI_1_158869828	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156767267 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	within coordinates
Cpgi904	CpG island 904	within coordinates
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	Intron
Rr367037	regulatory region 367037	698 bp downstream
Rr421284	regulatory region 421284	1910 bp distal
Rr421285	regulatory region 421285	890 bp distal
Rr421286	regulatory region 421286	728 bp distal
Rr421287	regulatory region 421287	321 bp distal
Rr421288	regulatory region 421288	374 bp distal
Rr421289	regulatory region 421289	within coordinates
Rr421290	regulatory region 421290	66 bp proximal
Rr421291	regulatory region 421291	122 bp proximal
Rr421292	regulatory region 421292	1104 bp proximal
Tssr9581	transcription start site region 9581	8 bp downstream
Tssr14474	transcription start site region 14474	1855 bp upstream
Tssr14475	transcription start site region 14475	888 bp upstream
Tssr14476	transcription start site region 14476	844 bp upstream
Tssr14477	transcription start site region 14477	148 bp upstream
Tssr14478	transcription start site region 14478	82 bp upstream
Tssr14479	transcription start site region 14479	40 bp upstream
Tssr14480	transcription start site region 14480	329 bp downstream