rs213195533 SNP Detail

Summary

• ID
  rs213195533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90982262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGATTGAA AATTGGGCAC
  CGGGGAGTTG GGGGATTTTT GGTTGTTACA GCCTGTGTAG TTTATAGTTT TGGGGTCTGG
  GAGTTCAGGC AGGATCCATA ACCCAAACTA GCCTTGCTCT CAGGATTCTC ATGTCTCAAC
  CCTTCCACTA TCGGGCTTAC AAGCCTGCAT CACCCACCCA CCCCCCCCAC CCCCGCGCGC
  Y
  TTATCCATGG CTGTGGTTGC TTATTAGTGG GAATATTTCA AAGTAAATTG TACTCTGTGA
  AACCATGTAT TTTATGGAGT TGATACCAGA GAGAGGGGGA GACCCAAGGT TCCCATTTTA
  GCAGGCTTTT GTGAGACCTT GATAAAAACT GAGCCTCAGC CACTCATTCT CCAGGTAGGA
  GTTAATCCTG TAGTTAGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss350468189	MGP_WTSI_1_92951117	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs213195533					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350468189	MGP_WTSI_1_92951117	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90982262 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	812 bp distal
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr29813	regulatory region 29813	within coordinates
Rr396168	regulatory region 396168	1478 bp downstream
Tssr8032	transcription start site region 8032	1348 bp downstream
Tssr8033	transcription start site region 8033	1020 bp downstream
Tssr8034	transcription start site region 8034	1008 bp downstream
Tssr8035	transcription start site region 8035	990 bp downstream
Tssr8036	transcription start site region 8036	978 bp downstream
Tssr8037	transcription start site region 8037	548 bp downstream
Tssr12924	transcription start site region 12924	1712 bp upstream
Tssr12925	transcription start site region 12925	1694 bp upstream
Tssr12926	transcription start site region 12926	1668 bp upstream
Tssr12927	transcription start site region 12927	1642 bp upstream
Tssr12928	transcription start site region 12928	1492 bp upstream
Tssr12929	transcription start site region 12929	690 bp upstream
Tssr12930	transcription start site region 12930	1952 bp downstream