rs213200798 SNP Detail

Summary

• ID
  rs213200798
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32245640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTATTGT TGTTGTTATT
  TCGTTTAGGA AGTTGGTCCC TCTACTGTCT CCCTCACCCA AGCCAAGAAG GTTAGAACTG
  AGCCCAGGAC TTTCAACTGA CCACTACCTC TTGCTCTTAT AGTCTATTTA TTTTTGTAGT
  GCTAGGGACT GAAGCCAGAA CCTTCCTCAT GCAAAGCGAA CATTCCACTA TTCACTTACA
  W
  CCCAGCTTCT GTGTTATTGT TTGCTTTTGT TATAAACATG AGGTCTCTCT TTGCAGAAGC
  TGACCTTAAA CTACTGGGCT CAAGCAATCT TCCTGCCTCA GCCTACCAGG ACCTGAGGCT
  CTCCATATGT GTCACCAAAA CCAGCTCAGA GCATTTCCTT ATTGATCCAT GGTAGCACAG
  GGCAGCTAAG ATGCAAGTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382906460	MGP_WTSI_11_32195640	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	A	A	T	T	T	T	A	A	A	T	T	T	T	T	T	T	A	A	A	A	A	A	A	A	A	A	T	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213200798					SNP	T	T	T	A	A	T	T	T	T	A	A	A	T	T	T	T	T	T	T	A	A	A	A	A	A	A	A	A	A	T	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382906460	MGP_WTSI_11_32195640	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32245640 () rs orientation: forward

Symbol	Name	Function Class
Gm73808	predicted gene, 73808	within coordinates
Gm74521	predicted gene, 74521	848 bp downstream
Hba-a2	hemoglobin alpha, adult chain 2	849 bp upstream
Rr444567	regulatory region 444567	1814 bp distal
Rr444568	regulatory region 444568	1513 bp distal
Rr444569	regulatory region 444569	359 bp proximal
Rr444570	regulatory region 444570	1656 bp proximal
Tssr100842	transcription start site region 100842	851 bp upstream
Tssr100843	transcription start site region 100843	1487 bp upstream
Tssr100844	transcription start site region 100844	1892 bp upstream