rs213200804 SNP Detail

Summary

• ID
  rs213200804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71735529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAATTTGAT CTAGGGAATT ATTTTTCTTT TTTTCTTTCT
  TTTTTATTCT TCTCTCATAT ATTACACCCT GCCTGCAGTT TCTCTCCCCC CCCCCCCACC
  Y
  ACCTTCCCCT TTCTCCATGA TCAACCCCCT TCCACCTCCC CTCAGAAAAG ACCAGGCAGG
  CCTCCCAGGG ACATCAACCA AACACTGGAT AACAAGCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321818282	CHEV_6_71708539	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213200804					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71735529 () rs orientation: forward

Symbol	Name	Function Class
Reep1	receptor accessory protein 1	within coordinates
Rr368098	regulatory region 368098	1062 bp downstream
Rr368099	regulatory region 368099	700 bp downstream
Rr631995	regulatory region 631995	595 bp distal
Rr631996	regulatory region 631996	1409 bp distal
Rr631997	regulatory region 631997	287 bp proximal