rs213201974 SNP Detail

Summary

• ID
  rs213201974
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91011225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTTTGTTT CCTCCTCGAC CCACAAACAA
  GACCTAGTTA CAGTACCTCT GGTGTCCTTA AAACACAGTT CCCTCTTTCC CCCTTGCTCC
  CAATAGAGGA CCCATAGGTA ATAGGATTCA GTTTTGTCTC CATAGCGACT CTGGCTCCCA
  R
  AACTATTTAT AGCAGAGTCA TAGCCCCTCC CCTGCTTGGT GACCAAACCA TGCTAGCAGC
  TGCTACTCCA AACCCAGCCA TGGCCTATAG CATCTCATTC CCCCTAGCCC TGGAGATGCT
  GATTCCAAAG ACAGCACCTA CTAAGAATCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391925	CHEV_2_91021037	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213201974					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91011225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	1239 bp proximal
Gm74571	predicted gene, 74571	1309 bp upstream
Madd	MAP-kinase activating death domain	within coordinates
Rr560660	regulatory region 560660	942 bp proximal
Rr560661	regulatory region 560661	1320 bp proximal
Rr560662	regulatory region 560662	1775 bp proximal
Rr560663	regulatory region 560663	1958 bp proximal
Tssr18868	transcription start site region 18868	1303 bp upstream
Tssr25161	transcription start site region 25161	1988 bp downstream